a) What is structural annotation?
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l) What is a problem by using sequence similarity for annotations?
Plant genome and transcriptome annotations, from misconceptions to simple solutions, Bolger et al., 2017.https://doi.org/10.1093/bib/bbw135
A beginner's guide to eukaryotic genome annotation, Yandel et al., 2012.https://doi.org/10.1038/nrg3174
Extra:
The NCBI Eukaryotic Genome Annotation Pipeline: https://www.ncbi.nlm.nih.gov/genome/annotation_euk/process/